Program Systems Analyst Salary in San Francisco, CA.
Updated on: Jan 14, 2026
How much does a Program Systems Analyst make in San Francisco, CA?
The average Program Systems Analyst in San Francisco, CA makes $170,381,
72% above the national average Program Systems Analyst salary of $99,092.
This pay is 34% greater than the combined average salaries of other metroes San Jose, CA, Charlotte, NC, and Virginia Beach, VA.
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Program Systems Analyst Salary Average
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*Data is estimated and depends on the generous anonymous contributions of individuals